Parametrized wesix execution with MAST SIAP-service images. Note that only URL sent over Atlantic,
parameter is a reference, not the actual data, which goes directly from SIAP server to WESIX server.
Selection of the image using VOTableviewer. Viewing of everything by plastic.
/Sesame/Resolver/jdedeg
private static final String PROPERTY_FILE_NAME = System.getProperty("user.home")+
System.getProperty("file.separator")+".reflex"+System.getProperty("file.separator")+"wesixProperties.xml";
private static final String COMMENT = "wesix properties for java client";
Properties wesixProperties = new Properties();
BufferedReader br = new BufferedReader(new InputStreamReader(new FileInputStream(filename)));
String line;
while((line = br.readLine())!= null) {
int sharp = line.indexOf("#");
String data;
if (sharp < 0) {
data = line;
} else {
data = line.substring(0, sharp); //remove comments
}
if (data.trim().length() > 1) { // remove empty lines
String[] keyvalue = data.split("[ \t]+", 2);
System.out.println(keyvalue[0] +" "+ keyvalue[1]);
wesixProperties.setProperty(keyvalue[0].toLowerCase(), keyvalue[1].trim());
}
}
try {
File wp = new File(PROPERTY_FILE_NAME);
if (!wp.renameTo( new File(PROPERTY_FILE_NAME+".old"))) {
System.err.println("Cann't rename " + PROPERTY_FILE_NAME + " to " +
PROPERTY_FILE_NAME+".old");
}
wesixProperties.storeToXML(new FileOutputStream(wp), COMMENT);
} catch (FileNotFoundException e) {
System.err.println("Cann't write to " + PROPERTY_FILE_NAME);
}
filename
/Sesame/Resolver/jradeg
x
org.eso.sampo.erda.taverna.scuflui.CPLOutputViewerPanel outputViewer = org.eso.sampo.erda.taverna.scuflui.CPLOutputViewerPanel.getCPLOutputViewerPanel();
outputViewer.outMessage("Sending "+url+" to wesix, please wait\n");
catalog = org.eso.sampo.reflex.WESIX_client3VO.wsextractorURL3VO(url);
org.eso.sampo.erda.taverna.util.TaverdaProperties tp = org.eso.sampo.erda.taverna.util.TaverdaProperties.getTaverdaProperties();
String tmp = url.substring( url.lastIndexOf('=') + 1);
int las = tmp.lastIndexOf('/');
if ( las < 0 ) {
tmp = tp.getString("resultsDirectory")+ "/cat" + tmp;
} else { //remove '/'
tmp = url.substring(las + 1);
int dot = tmp.indexOf(".");
if (dot > 0) {
tmp = tmp.substring(0, dot); // remove extensions
}
tmp = tp.getString("resultsDirectory")+ "/cat"+ tmp ;
}
outputViewer.outMessage("Got catalog "+tmp+" from wesix\n");
filename = tmp;
url
catalog
filename
org.eso.sampo.erda.taverna.external.worker.PlasticWorker
org.eso.sampo.erda.taverna.external.worker.PlasticWorker
net.sourceforge.taverna.scuflworkers.xml.XPathTextWorker
net.sourceforge.taverna.scuflworkers.io.TextFileWriter
net.sourceforge.taverna.scuflworkers.xml.XPathTextWorker
MAST SIAP
org.embl.ebi.escience.scuflworkers.java.WebPageFetcher
org.eso.sampo.erda.taverna.scuflui.CPLOutputViewerPanel outputViewer = org.eso.sampo.erda.taverna.scuflui.CPLOutputViewerPanel.getCPLOutputViewerPanel();
StringBuffer temp = new StringBuffer();
temp.append("http://archive.stsci.edu/siap/search.php?POS=");
temp.append(ra);
temp.append(",");
temp.append(dec);
temp.append("&SIZE=0.05");
String MASTURL = temp.toString();
outputViewer.outMessage("Starting " + MASTURL + ", please wait\n");
ra
dec
MASTURL
/tmp/siapresults.xml
/tmp/siapresult
net.sourceforge.taverna.scuflworkers.io.TextFileWriter
org.eso.sampo.erda.taverna.scuflworkers.VOTableviewer.VOTableWorker
Completed
Write_Text_File
VOTableviewer
Scheduled
Running
http://www.eso.org/sampo/reflex/instructions/workflows/Sesame.wsdl
sesame
Completed
Write_tmp_cat_File
Plastic_fits_viewer
Scheduled
Running
Completed
SExtractorConfigFileReader
WESIX
Scheduled
Running